Scaffold Ga0065861_1069611

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1069611
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F031403	Metagenome / Metatranscriptome	182	Y
F040590	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10696115	F040590	N/A	MSGYGTIISGGARMTKGLTKGINDKLEEYAESHKMSAVLANSVRNVFNQNPLSDPHLNNINVKAAKKFTTPKLPAKI*
Ga0065861_10696116	F001059	AGG	MAYDIEALKADLPTAKELAQFVYDKTQISLDLVGKPKEDQYQVAKNALEGKKIPSDYMTDLNPYLDKKELIPEDNIKQLPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVMGPLEKTAVGKRINKFGQEQPEKYTWLDPRTAETMLRRADGTYTEKGRGLYAYCSGEKGGGIWPLIDRDLTNFTQKNVTDPWA*
Ga0065861_10696117	F006264	GGA	MEDLTSLFRQKLPAQAEVCARKALERLQKDLQHEHLLSPQDVYYLASAAQILLDIRDLYGKK*
Ga0065861_10696119	F031403	N/A	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIPVSNSTEPIRGIDYIQPIVTPGIDYATAIITKCLMPNGKVNFEFERFSEDGQQTSPSSHRNG*