Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1057786 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1057786 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7005
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7005

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011887	Metagenome	286	Y
F038862	Metagenome	165	N
F045855	Metagenome	152	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N
F085795	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10577861	F011887	N/A	MIERRDAELASLREELSQSKEDAAAQRTLNTEESILLDDIRLSLFKLLKDQLGAMVSGEIAEQLKTKETAFDITDYFDEIREDITYNFDISSFQSEIEEIVTERDITDEVTEIVEDVLRGAKITIG*
Ga0065861_105778610	F066148	GGAGG	MSNHLSEVAEGIIQACPTQLNPDEMSTLIAYMVWSYHMQGDWDDMLPKIVRCINLDDGHAQVVRVAHKDANKFLNKCVRNARRS*
Ga0065861_105778612	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTEDGCMAWEDEEKSDFVMRLLDRDNDGKNLLVVIQPEMNELALYTVTGYCVANDLPYLIKDWDALSAEGQKEAQKTRH*
Ga0065861_105778614	F085795	N/A	ASLDLGKSRSIADITGLNQSNLVQPILYLMRCAGLEGRLKDEATVSRIADTYMGDILHHFDKNTRWVKNNRCFNSVQFKAAMAYCVHRRVLPDYEAISVLEMLQNDKEYLWPSMYRNYREQIMFPNGKLNTSGKIVANDKFCRGVYLLERRMKDQSKIQISSGFLDDLNSNVRRVIRMAADE*
Ga0065861_10577868	F045855	GGAG	MKARINITQRMLNKSIIDANKSVVAFFRDCYPALGYDFIENGGKNTLVAYYDDGHGYWPTSIRLYRRPRGDKLLSVEGLTRRANAGNVMTFEYDTKSNRIIVRLELGEPPKEINLIE*
Ga0065861_10577869	F059448	GGA	MDTGFKTIIEVIAKRTWLTDLEVAERAKMKLDAALYYLRRLRRLGLVVSEWVHGQRVWGVLNCT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1057786

Overview

Ecosystem & Geography

Associated Families

Sequences