Scaffold Ga0065861_1057005

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1057005
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1592
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040863	Metagenome / Metatranscriptome	161	Y
F073754	Metagenome	120	Y
F087744	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10570052	F040863	N/A	MTNKQIEKLQKRVDEINQIFKGSWENIDSGALLTERSDKEFLINKVGVNIRLSGNNKYYWGYQFAKFRKNIDKYGSNYNYKDIVGSKISFNKYSINQEYSPYSNDLWRFDSVEEMKGFVKGYNAMCNILEDQQKKRKVA*
Ga0065861_10570054	F073754	GAGG	MSCNNCNNEDENETLYWDNELDKPSMVDYTCLCQSCYNKMATESEE*
Ga0065861_10570055	F087744	N/A	MTKNILVTFDMQIGDYEHSDQYIFHNKTTDYNYCKQFWSLKKKNKLEEGVYWDNQGLNAISVYSTQEITEQETKTLKRLGVA*