Scaffold Ga0065861_1055795

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1055795
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1363
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016061	Metagenome	250	Y
F028350	Metagenome / Metatranscriptome	192	Y
F048647	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10557953	F028350	GGAG	MMKRSGRVNPIARALLQTDRRRSQVVPDKTKYNRKKDKDNANQNHTDEKSKDN*
Ga0065861_10557955	F016061	AGGAG	MSYIKVKAVNILNVLTGAKPSIDRINKRKFNHLGKYYVGASVDGKFLQVNDGKHIRYYGNPFHNLYRIVSKKGTDYVIHQAK*
Ga0065861_10557956	F048647	AGGAG	MPKKLYNVKIDFEVWYDRNFEIVADSADEAEAIARQAAREQTQHLIGVDLPVENDGDWTYGDQWYGTAYV