Scaffold Ga0065861_1052928

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1052928
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1975
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038091	Metagenome	166	N
F047991	Metagenome	149	N
F101904	Metagenome	102	N
F103560	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10529282	F047991	GAGG	MQLQTQNLVTTNNSFSCANIQDVLKRFKKRHKFAKQQQLSKHVTCTSIYTDDVDICFMFNVVHNNTTYVVDVYANYNNSYVSGNVYDCSCVQTATQILKQHFNLNVTFTANYEDTEIYYNAK*
Ga0065861_10529284	F103560	AGG	MLKNKFAFTVINYNTLLIVNSNTQEQRYANNVTLPSLYAVTQKQLAKLFKTATAN*
Ga0065861_10529285	F101904	N/A	MQNLQVHYTYKTKNALVQDLCIVQSKTKRFTKTQQLNTQLKLAKQLNLKHFYAVTLTHYSVC*
Ga0065861_10529286	F038091	N/A	MQKITSTNTLIVTNPIMSPLFTAQLITVASYNKLNAQTKADISVCAYNAKAYLNAMSQSYNAQANVNVVYNVTKNLSYSVAV*