Scaffold Ga0065861_1047948

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1047948
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3043
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F032084	Metagenome	181	N
F038638	Metagenome / Metatranscriptome	165	Y
F054415	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_104794810	F008882	N/A	MSVTQYNFKKPKINRQELELLNWFLAHTNDNPLINPNALELFKANGYSAMNYQDLVNKIKTILKTYKTKGNYES*
Ga0065861_10479483	F032084	AGGA	MRLILSEKDKHIIVTVLGDYATEIDRQPNKSIADKDTYKRISNIISQVAFGKDNEEKPD*
Ga0065861_10479485	F038638	N/A	MNYEIAEYKYINHMKDRYGLIGEIEYPSRAHSAEDYEGNWLFVSPQGIKMGKVFKNGDIIA*
Ga0065861_10479486	F054415	N/A	MGETMTQHNSKVEQQRERLKTEALDNKVTTLEIRAGRIQTWYESGRVVTEYPRDKRKKTITDHRGIK*
Ga0065861_10479489	F013295	AGG	MKVNDLTPKQFARREIIKYLRDLFDNPQKYITNFYSYTHKQQEEILRFISLDEDRINKLLNKPMGEE*