Scaffold Ga0065861_1045515

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1045515
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1782
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012723	Metagenome	278	Y
F017226	Metagenome / Metatranscriptome	242	Y
F030875	Metagenome / Metatranscriptome	184	N
F101912	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10455151	F017226	N/A	LHLIKWAVKRGYSVAVYGEGEFDGIHHTYKEIKDNVEACDMGEMLLLTPSVKQEGKWKRLASFAYVFEYEQAPDETIYDYAVNEISDAWSAEYNATA*
Ga0065861_10455153	F012723	AGGTGG	MSNDDIKAYFDGSNITLAELSAMTGKTIQQLKAILMGGK*
Ga0065861_10455154	F101912	GGGGG	MQALAIFKNKELAPVSYIANIRGRGIKHIQTLVYRFADDNGFNYSHITYYKRRDEYPTIAAKQSFPYYKEV*
Ga0065861_10455155	F030875	GAGG	MKNTKTLKIKVITTRPAPKRITQPASHWRDIMGGMKRGHWFEVECETRDDVYNRVGAAANTYCKGRYSFYKTAKNKYIFEIIKG*