Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1044453 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1044453 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3266
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3266

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F010983	Metagenome / Metatranscriptome	296	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F033721	Metagenome / Metatranscriptome	176	Y
F058800	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10444531	F010983	N/A	ETLETYARRVVKDSKESTTKAAEHGTKMHTEMENILLGRAVSNDEILAPYIKTFSEWAEKNVEKTYWCEKGLVGAGYAGRCDAYVKLRGVGDAIIDLKNRKVNPKTIPFYENSDCPQLWAYRSASENPKAACVSIVLASNDASKLMTKVWDEDELYQAGIGFNALLKVWAWVKGYTPPGMKL*
Ga0065861_10444533	F033721	GAGG	MRWIKKEFDEDGKPEWSVYIDEAGEGNEDDWSHFDTYRTRDEAVEACWKFTWEDYDCNDK
Ga0065861_10444534	F058800	N/A	MKQALSRLFYFLGDTISRTILRAGIGYGLYKTFMLWSIELDEKFDVWKEIKPKRRKKK*
Ga0065861_10444535	F003304	GGAGG	MKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSIDFILIDKPLTHPAQYSKSAIGNIMATKHYDQVTFVDADVLIAADCPNIAEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDMIQLATSIQYDEAKLKGLGR*
Ga0065861_10444536	F021063	AGG	VRSTQLCRGDYDDRVQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT*
Ga0065861_10444537	F022371	AGGA	MLCLLDLGTIVWVIASFILYSSLLLSALYCAGYIIFKLIDFIRKELEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1044453

Overview

Ecosystem & Geography

Associated Families

Sequences