Scaffold Ga0065861_1043016

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1043016
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2253
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033949	Metagenome	176	Y
F043980	Metagenome	155	Y
F083256	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10430161	F043980	N/A	EYGFMIERVGKQKAISEWLSGLALDIEFYYDDIVKLAIKMGSIDKNPSDKLISKVEQGYWDFMANIILGFEPKKQ*
Ga0065861_10430163	F033949	N/A	MNTKVKWFNEDYDLGCDVSKLEKLGFTNSSWKDDIAPSYSNDKMQIFFLNKNKFDEHKNRSKFSVNKILDDENIETIYETDYFYKVLQLAEESK*
Ga0065861_10430167	F083256	AGGAGG	MKKMDSKNIDVIINKMKKMLNEKELGIKINFGGARYDADSFKVTLEVSLPNARTKEEKHLEALMRMRNANPKYYRDWDLTKIIKIKGVDHTLNGYTNRPNSKKPFIILNLLNNKKYLITEEQVDRLFGDPTWVDTLNFNSTEKGVSNE