Scaffold Ga0065861_1040610

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1040610
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10875
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F014488	Metagenome	262	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_104061010	F014488	GGA	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAKMQKMNPSIDLNQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREQCPKWNKEAWAKGLRKRKCK*
Ga0065861_104061012	F024265	N/A	MNEAYTTPEARANGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0065861_104061015	F010463	AGAAG	VNYPQEMVLAATIHRVKMCEDKLREFEQMVSTLTSTMAQNRAELASKGLERFVIGVSTPLDIPKELVPTFGKHRAKRNRSHSTVVKRWTLWKHQLDSGMSMSELARAWGVHPTAILFAKKQNFIVRKAKGGSR*
Ga0065861_104061018	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKKK*
Ga0065861_104061020	F033350	GGAGG	MSVDVDVPKVKWSMLEWKSSEEKPKNDEKVLMDIGGEVCVGRFVDGSFVSRSWGHSENDVRLWASWPKAPQW*
Ga0065861_104061021	F023833	AGGA	MKSHSDQLQDIINDAMRKAASLEREKCAELVQRLADGTEDQVIQDILNEVVVALRRLTDER*
Ga0065861_104061026	F005846	GAG	MKSLIPLPARPDGSALPASDKVYSKNSAIEGKLNGWRGLFDQETKLGYNRHGKLASNHNLMAERLVGAGIKSRFIDCEIMGQRTKTGKGTIVVMDAFDPMNPKPYAERVKEIEHLEAVTFDVQDNKLLRFVRLAHNKINAIWEEMNYQNNRAGEVIWEGFVMKALGKYPFITKSNYVSPEWQKQRIRW*
Ga0065861_10406108	F007164	GAG	MSEKQIGIELKKQIKLLNEAKDRAISSMGETISLAADAGQILLSAREENLNIVEILLISGVNEEEGRRLERVAKARPLLSAPNPSQLKQLALWSGILPDPIETSNPKAETAWHSYIIKARQWLTRKSPGSWSDDQKRQFIEEARPIVEAYREAGGRV*