Scaffold Ga0065861_1038487

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1038487
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6554
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048584	Metagenome	148	N
F080242	Metagenome	115	N
F103901	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10384871	F048584	GGAG	MQDYDLTQYCNDIAEEIAQDATNIEKAMDWAHESADGSEYVIYYAKAHTICQNCNIDQGEDFLSECYGGEHGKSYDEIACIMAYGEINARICARLWEIFEEREEEAA*
Ga0065861_103848711	F080242	AGGAGG	MGLDNDLSWAHKKGYYHHSNPSTPDYYTFFHKGVLRPARFKAMKVVSGETEGDKGQSEAILAAGGHYKDYLGKSQYNDNVNMASGRAVEYYCDLCLLKDASPNEAYREALNVLTALQTGSWIDQDKTAAQIEGRQKIRFGADGKAPRKKDEVAERCEFELVCENALAGLREATAGANKIVGQTELRGNLPGCQLPYLGYGDYQEGAVELKTQWDTAVDTDQPRSNSLPKAIKPPHLMQVAGYWHITGKIPRVVYANRIGYAVFEATIEQLEYALQDIIAACMRREKLMMVTENVEQLLKLCDPQFKDSFVWRDQHPDVMRSAQVLAGVTK*
Ga0065861_10384873	F103901	GGA	MMTEINMQTLWQTETHEVDYHAGYLVIAESDTQQSFVVQLTDNNGRNVTRKQFTSAVTTHGIDRACSTFKRLAGRAQC*