Scaffold Ga0065861_1035725

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1035725
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2492
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006404	Metagenome / Metatranscriptome	374	Y
F022858	Metagenome / Metatranscriptome	212	Y
F091975	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10357253	F091975	N/A	METKELIIALIGILGSGAAFKLYEFVIKSKRETARELRVEKVNQNPETMFREDLLKRVEEMSNALDLAQGKILDLTQKVAELQTENKYLHREVDILKRR*
Ga0065861_10357254	F022858	AGG	MKRQLGTIMSNIKTILGFADSEFLELLIALLHVILLPIAVITEMGFKWHIIFVAITGGLFQLYSVGMRDLRCRYYSCMIATFVSIFTAINYATSGLLFEAPSRFGWVFIALAALVNQIRVTNQWKQRN*
Ga0065861_10357256	F006404	N/A	MRGNVYISIPAADNAKALPSAITKYDWNTYTYDEDGAIDTTTLVHPSWSEYGEKYKGQFGAPVSVSVDGVEFIVYELEVSWKDSETSALIALGSRKAAPKYTLMNATEARAFIAANSDVQL*