Scaffold Ga0065861_1033878

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1033878
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3260
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024203	Metagenome	207	N
F028320	Metagenome / Metatranscriptome	192	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10338781	F024203	GGAG	MINELLNDWKQSMTGTEQYHAQAIDVLEDRIAKLEDKHRIASQQNEVLMNLLSKLIKRDKDE*
Ga0065861_10338783	F028320	AGGA	MANQYRKVLSITLYANSEGKATHGNSNWKPYKDGSPADVHLRKDAKYSVKLFHNDDGSLGVSLSEVIIASYTDSISDGVSQPGMRSLAESIDPPKSPIASIKDELDDADEIPF*
Ga0065861_10338784	F096075	GGA	MKSHSKSFLSTKEATELMFGDTPSNRKRLLRSLKNGEVKGKKFGKRWFVYTSEVNGGEE*