Scaffold Ga0065861_1031352

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1031352
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3181
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F009066	Metagenome	323	Y
F031026	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_103135210	F009066	GGAG	VTPEHEKHLAGIIRDLTRDLEAKYRKGQEEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIAEIALIGASDESVVAAQSRESCRQILAGLEGVPSAHDKK*
Ga0065861_10313525	F006891	N/A	MSTDQIAELSERLSVVREAVARVETRQTVVLDLLERSQASLGEYHGRLTNIEREAHTIKTKLWLVALISGAVVSTAWELIKRRFGL*
Ga0065861_10313528	F031026	GAG	MRGGRNALLLILSLALASCATVSQTQDGPPPSPDTVSYFIYAWDKAERTNKPCPQAYRDLFAQSLKALSDSLAETERERARK*