Scaffold Ga0065861_1031216

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1031216
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5991
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017486	Metagenome / Metatranscriptome	240	N
F049548	Metagenome	146	Y
F060810	Metagenome	132	N
F091751	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10312161	F060810	GGAGG	MSIKVGLPDVTFNALCKLTEIDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVKDGLDLDGDTGIHRSIISIALEKEEQGL*
Ga0065861_10312162	F049548	AGGAG	MNERQKQIAECTEDFLAALPNNMKGIDLGAIVCTIFEAFDLDYEERAQICEGVLNVMREVEMRRDERASQAADDVIARAAAKARK*
Ga0065861_10312164	F017486	AGGA	MNKIIITNAHAHGFAFACDTETQGQVFIPVHIADGFDLAPGDEIHAVLVPNYQDKSDKGTPWQAVKLQRDSEVCEKAIIDNSQTLNNEALDAEIMRYILAGGYHTTAELADYFELDHKTAGNAAQRLFNSGKIAKADVFNRVGQKRPTMILWAAAAKTFIEVV*
Ga0065861_10312168	F091751	GGA	MSEMFYATPNQMYRINKLTHLLSGASGSPSASLPISKSDADALIKDMIKAEKLMSNSDTEEPKKVKRLKKAKPNRDDEIKVIKISI*