Scaffold Ga0065861_1027302

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1027302
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6679
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034599	Metagenome / Metatranscriptome	174	Y
F053979	Metagenome / Metatranscriptome	140	Y
F059720	Metagenome / Metatranscriptome	133	Y
F065836	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10273023	F034599	GGA	MIDTIYIPTLGRSHNQITFDNMTSSAQQITKLVVQPKEQHLYPNYPIVILPENDCGITATRKWIWEQGKNQRYMVMDDDIKMACRKPWHDGEKTKRIMTDDDWKHMLETISQWMDSGIAWGGCRTGGLPPAGREYIDNTGTAEVFFFDGKQLPEADELDWELSTAEDISLSLQLLSKGYSNRVWDRFVYLSDFVGTEGGCATWRTLDIINNNHAKLIDKFPEYVSYNGEKEMMGGIFKKIKIQYKKAYNDSQKSKASLEEFM*
Ga0065861_10273024	F059720	GAGG	MKEGTIVTIAMSNGAEIIGKFIKEDMMTITLYRPRLLKATQNGIGLVDGIAMSGISPTGDFSFNKSSVMYMIETVKELATGWTSQTSGIAVPQQGGLIK*
Ga0065861_10273026	F065836	AGG	MYKFVENKDKTWSGIGLTEEAGKYQGVVYEYGKVSIVENEEKTAASLQFDFNVLDSNGLPKEMFDDDFYSVIGKILEELLEQQMNEDALQYVNTDD*
Ga0065861_10273028	F053979	GGAG	LERARLMRNLRTSKSKYKGIKYFVNRNGKNWEVVEFPTNDVVSTFHNKVDAELLSERLTKNKPFGDRPLPNFMKGNKHIDICE*