Scaffold Ga0065861_1026437

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1026437
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4020
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F036651	Metagenome / Metatranscriptome	169	N
F037180	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_102643712	F008595	AGGAG	MSNEENKMENQEPVIITFNDVEYRAADLNEEQMALAAKLNVAGKKLARLQEHYDDYVITNEYKNLVIESFDRAINAEDVAEVVEEE*
Ga0065861_10264372	F036651	GGAG	MDIHLNEVGRVKPLILTKRQIRGYYKDYLTGENKVQTANREYTVRDSLTEIAYLMGEQR*
Ga0065861_10264377	F001942	N/A	MPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRSMSGTYKNYHCDILAFVFFYNEHKRILFKSNTSSQNYFTFDKKVITDTMEIDSLQESLDTLSAVPVLNPII*
Ga0065861_10264379	F037180	AGGA	MSELAKVDDKSTLNISLSYLLQIIGAIALAVWGYANISEKIDFNDREIQNLRANQNKYIFPDIRVLEEQVIELEKEVLILQTELDLHKKEVR*