Scaffold Ga0065861_1026035

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065861_1026035

Scaffold Ga0065861_1026035

Overview

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1026035 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8725
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020000	Metagenome / Metatranscriptome	226	Y
F031699	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10260351	F031699	AGG	MNLSDSARELSLYAENVEAYIGPVIRNLSKHYKRGNYSFDLAIKSIERYCLQPAAKQYHLEHGSMSSKWSDIFPKAVRLEAAEDIASRWTAEFKLSNFWD*
Ga0065861_10260356	F020000	AGGAGG	MAAVANTAVDRFTNAVEHTGAEMTSVDDWMQVPAHSASYAFAANVSSSGNFTLAIEANFNGDGSWFTIDTSKTINAAGQYVYFCDGKPATLIRMRIASIASGTVSLIPHITVAYHG*

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