Scaffold Ga0065861_1025301

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1025301
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8035
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006958	Metagenome	361	N
F030557	Metagenome	185	N
F048577	Metagenome	148	Y
F055197	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_102530112	F030557	AGGAGG	MSKFYLTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLTKKEVEELLIKLSQIKVNDLPLISMKQEKFISFDMPSHKKFIEGIGFKKYSNQGFRTLNGHFKQIQEAEQNIVRNYLYPGLDQWELLEKLEGLPTEEFKKVKPEQLQYPWILKKCQR*
Ga0065861_102530113	F006958	GGA	MSKIEHEINQYLYVRSNIINILADAAIAERFIRAPSNRRCPSMYQLLETYYDKKDWGYHVEPSLKLRGTPRQMQNYDTAIDLLLLIDTDISEDPVLMRKISWMRANRNKWTSIGKYFGIHRTSVKRMYDSVLDKLSNKIITQSVDILIKKFS*
Ga0065861_102530116	F055197	N/A	MTKKIKDKYKNVSAYSFTTYNNELVVSFDGFEDQKDIIEFADFVFARIKMRYWHTDKVPTFH*
Ga0065861_10253019	F048577	GGAG	MFEKWIEEKQTATDHDIEKDFQISINTLKKWRLADKGPLHFRLGDKILYPRAAFVEWFMKHIKNKKADVVTIGSNRTKKDISKN*