Scaffold Ga0065861_1022664

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065861_1022664

Scaffold Ga0065861_1022664

Overview

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1022664 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3518
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010275	Metagenome / Metatranscriptome	306	Y
F010878	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10226648	F010878	AGGAGG	MKIIAWHIGIVWEDGTEEYLGDVPDWVATRVDEFLNELEED*
Ga0065861_10226649	F010275	GGAG	MSNEINNTIMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQALSTADYRQMAMESLNAQRKHYTKED*

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