Scaffold Ga0065861_1020551

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1020551
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2407
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008400	Metagenome	334	Y
F057745	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10205515	F008400	N/A	MSKQDNNDIIPKLALGMTLFLALKLVPKVLAWWTKTNKKQGEIL*
Ga0065861_10205516	F002390	AGGAG	MNHHAAQLFPIALQELIEIGEKARKQREDGERAKRVARPRGARACMHVACKEKQAKQLQLQLK*
Ga0065861_10205518	F057745	AGGGGG	MRVTSKLLDDKIHTLNVLLGRPLTPYKEDKSGKLIKGVHGQCIPCPNHFILDSSYGGFRLDIMAKGGGVNVILDRTTRRELFEQINAMIKGYQIGIS*