Scaffold Ga0065861_1019126

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1019126
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3352
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044458	Metagenome / Metatranscriptome	154	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_101912611	F044458	N/A	KKEEKKKHSNETIKLLEKYQKFKHEFHTKWGDQKRLDRLVGVDFRVKFMKAEQIFKESVLSNIDTTTVKMIDMMYRAYDALEEEMQTLGYKPLEPHIRCFDWDGQIWYVTDLDYEVPRAMQMYKSEGKANFISIQELLRTVPKELMQMRLDLAMMFEGSKFVRIDRK*
Ga0065861_10191266	F099546	GAG	MTKNKKQLNIETLKRQIDKGKSLRDVSVSMGKSKSTILKAAEENGLKFDNKSHWANL*