Scaffold Ga0065861_1016036

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1016036
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2659
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010201	Metagenome / Metatranscriptome	307	Y
F031710	Metagenome / Metatranscriptome	182	Y
F051968	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10160363	F010201	GAG	MIYKNIGAAIKAAKEMCVALDTYVKITECKDGYELFGTGKLVMEIKE*
Ga0065861_10160364	F031710	GGAG	MTGIEHAILATSVLAAFFYVGKWMGKKEKVEYIVEHTLNTLEKNNMIKVEVDKKTGEKEILPLDKYKKIW*
Ga0065861_10160369	F051968	N/A	YCKYRVSDSEKERKMNIEKVTNMMCEFVAYVDDFYNEKSGIYPIKGMTDMMVIKAVQKHVANVGMDFCADSVDREWVRDIILADNDVIWSAN*