NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1015355

Scaffold Ga0065861_1015355


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1015355 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10729
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029471Metagenome / Metatranscriptome188N
F048362Metagenome / Metatranscriptome148N
F056671Metagenome / Metatranscriptome137Y
F073589Metagenome / Metatranscriptome120N
F076607Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0065861_101535518F076607AGGAMTRYKQHIIDELAKLQFDYAECKIEMDEFISGITRLGVDSPGDIEEHRSNAEEARYDYKVSKHEDKF*
Ga0065861_101535519F056671GGAMRIMMTLTGLILGMLGMITAIHSDHYVLGILISFAGVMTMLTGLPDNQKDR*
Ga0065861_101535520F048362AGGAGMLIKLQNWLMNVAAKWIWIAIMLPIRIILGCIFAVSKHMPTKVELPYKVVKNEQRKENWYN*
Ga0065861_101535521F029471AGGAGMMASELNQQDYSDSRLGDMEDVLDCVDMKSGIKTFFNTVISPFADHQDWAMLAEWNANSIIGVFQRHHEQCIKSLDKTRDLMKNAMREDVGNEITKLNVDKLIFRRDAQEVNIKRAEAILNEFHICYEVTFGKKFMPQSKTAAKDVTKQMKEYNVARLKEALGQK*
Ga0065861_101535525F073589AGGAGMNYKVNIWQDDTLKREIVYSADNDIQAIQMASAATPDGCRSTYEQVMEEQCPTEKEPMVQKEEDQLQKAS*
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