Scaffold Ga0065861_1014310

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1014310
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4827
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F071638	Metagenome / Metatranscriptome	122	Y
F087763	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10143106	F071638	AGGAG	MSNLKIDIVKFNSHEKALRYVQELGFSLSSRHCFKEDKSFLYTKKFTRQQVFLRSTYDYLNDNTMEMGTVWTVQQF*
Ga0065861_10143108	F002593	GGAG	MSKLIYSKNGSATTESIRNASPMLQAIWDRSHMFGANIVRVRANLDRFGNDTGKTFNSYHHEKVSVYKQKDEVHESNALYFAQKIPVTKSNKGMQILEVATNLDVQDTLDIIDEIQYYAETSFLGRLWNRIRYGTPMSITA*
Ga0065861_10143109	F087763	GGAG	MAQMRVKDQDLIVEQVVEKIEATELDKFKAREDVQAIQEAMNERIGMIKQLHNAYKEYEKNIKDDIKELVELVDSFQEVNGLKESNHYANSTGFRLSNVSLYGSPDVPEYKIDWKLPTNTKRELAVKLRLQTISGDFDVYKLIDELTSEFSS*