Scaffold Ga0065861_1013370

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1013370
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3247
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011718	Metagenome	288	Y
F053639	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10133701	F053639	AGG	MSLLRDTNNNLSSKRVAGYVVLAVVLFAFVGDLFEKLVINESVANTLIMSAAALLGIGTFERKN*
Ga0065861_10133704	F011718	N/A	VIIAWRGCGGTSGKPVTTIIEKPVPTIEYVDRWRTDTVRFVSKEFVTIRDTITSEIIVNRLDTLFLVDTVKIVEAWLTEIAKYDTLIDQKNASIQLNWQNYQNRSENLKVTYTPKKVAGAKFALGVHGNAGLISDFKTSYVPLMGLGVQATVKKTYFSVDYGFNGQHYVGIRVGRNIVNL