Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1012464 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1012464 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5470
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5470

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F020445	Metagenome / Metatranscriptome	224	N
F035490	Metagenome	172	N
F096058	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_101246410	F020445	AGGA	MSDFDNTAALWKRQPRDTDVAGKKYPHYNGNVTVGGKKMNLAAWLNVDKTKEGQPDISLKISEIMTKEDAPF*
Ga0065861_101246411	F015659	GGA	MKERTLQDAIVQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTDSTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKVKEVAKAKPIVKLVPKAKVNIEELANDWIEVLKKTAENSTSLSNYEKNLNVLRKEYISDLHQIYTDLIQQQRIDSAYISLQQTITNRKI*
Ga0065861_10124643	F035490	AGGAG	MNKIKLGKRTWVNSKGKKQKAHTFTYKENGKKVVVQSPNKQWLEQEAEKILLRIGNINPKNMNVILSVPLSYAWEVYSKKCRSRAYEPTINFSKTTFKEYSEHYKHIAKHCGDVDLTKVDVEYIADFVKKIDDLDFDYKKKIFHTFARIYDTQVGMAETDPFKVNVFKTATFFKKEDAPKKKKSGKIDFEEWNFDRIKTIISKIPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEVTNSVDYEKELAPPKTEAGYRELEISASLKDQLIDYMNTLPEDQQCIFLNSKGKFHDLKNMITCLDKAVESLNLKLPVARKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYATSKDSVKYSDHQTNNYNWN*
Ga0065861_10124644	F096058	N/A	MYFLIFQKNNKFITYTNQVFGNEEDAEFFAKRSFKRKDVWKIVPYDQEHIDKYWYKT*
Ga0065861_10124647	F016879	AGGA	MSVIKESFFEASFKTIEEFDNAEVAAVSNVGDYAELTIMDIKLDKSVIKTNQEKEHGNATNEQHSKIVSEIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1012464

Overview

Ecosystem & Geography

Associated Families

Sequences