Scaffold Ga0065861_1012435

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1012435
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2930
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023293	Metagenome	210	Y
F032573	Metagenome	179	Y
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10124354	F057197	GAGG	MANFETWQYQNLVQFAKEATERMNLLNAEVEALNADLKSAINAYRDLLRRDTLGFLKASHPAETEKTGE*
Ga0065861_10124356	F023293	AGGGGG	MRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQRRPPLDLSNVPDALF*
Ga0065861_10124358	F032573	N/A	MKNKMSEAWREWWLIAHGKNTPAGSYNPLEAHMYEAWVAAWDAADKQSQSEITYLKEQLMRANTNDGAYKAAFLAGQMTARGGSWK*