Scaffold Ga0065861_1008908

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1008908
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9644
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F000918	Metagenome / Metatranscriptome	834	Y
F007772	Metagenome / Metatranscriptome	345	Y
F008577	Metagenome / Metatranscriptome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100890812	F007772	N/A	MSTKSYQLLKISWNLYDTHFTKLTDEQKSKVWDIYYDFY*
Ga0065861_100890815	F000352	N/A	MRNIELTEADCIFVHYVLRMYATQTANLDNQDKSEIREVAAKFK*
Ga0065861_100890818	F008577	N/A	MKLTWEEIKEIANRLDEIVGNHFHEAMYDTIFEREGDEELEVTDEDILAIKEQLKRIL*
Ga0065861_10089089	F000918	N/A	MYKTNQQCWDEVTRSIIESDRRTVICQEMFGQDNLIGLTNDQRDQFWSSI*