Basic Information | |
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Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1007792 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14837 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (45.45%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006893 | Metagenome | 362 | Y |
F010247 | Metagenome / Metatranscriptome | 306 | Y |
F013525 | Metagenome / Metatranscriptome | 270 | Y |
F018712 | Metagenome / Metatranscriptome | 233 | Y |
F031868 | Metagenome | 181 | N |
F032656 | Metagenome / Metatranscriptome | 179 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0065861_100779215 | F006893 | AGAAGG | MEIQTISESCQKILCNNKLYKDIDFFKVPQNKVLLAVIRSVTQKSFAEIGKHYKKSWFSIYASVKDCQKNGLKSFTNKVIHLVKEDLK* |
Ga0065861_100779225 | F031868 | GGAG | MVTVKQEIERLFLESKKQPHIVETYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQQWKETWNESKI* |
Ga0065861_100779228 | F010247 | AGGAG | MNVQGIVKYVFDNRLGKDGSANKFPNFKFKVGEQEIVLWSAIPHPAIAKGKNISVTVQASKKNGSLFVLTKEDKSPMVQELPNDSKPDTTFNVDDFESENFNTAVTTIEKQMASSTVSTKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN* |
Ga0065861_100779230 | F013525 | AGG | MHDLALKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDDKYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLAR* |
Ga0065861_100779232 | F032656 | N/A | MNFYLVTYAISFVKVNPDNVKEDICHIRFFDTDNFTNSCSFLASLKQVKKLRITGVEFDIEDCDWYDYYEDISNTIH* |
Ga0065861_10077926 | F018712 | N/A | MCQRTKPKMLDRKMRGSHDLQVRLYEAMKQSDLDKEEIQRLNLIIKKLEDNLENAFKSGN |
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