NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1007792

Scaffold Ga0065861_1007792


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1007792 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14837
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (45.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F010247Metagenome / Metatranscriptome306Y
F013525Metagenome / Metatranscriptome270Y
F018712Metagenome / Metatranscriptome233Y
F031868Metagenome181N
F032656Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_100779215F006893AGAAGGMEIQTISESCQKILCNNKLYKDIDFFKVPQNKVLLAVIRSVTQKSFAEIGKHYKKSWFSIYASVKDCQKNGLKSFTNKVIHLVKEDLK*
Ga0065861_100779225F031868GGAGMVTVKQEIERLFLESKKQPHIVETYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQQWKETWNESKI*
Ga0065861_100779228F010247AGGAGMNVQGIVKYVFDNRLGKDGSANKFPNFKFKVGEQEIVLWSAIPHPAIAKGKNISVTVQASKKNGSLFVLTKEDKSPMVQELPNDSKPDTTFNVDDFESENFNTAVTTIEKQMASSTVSTKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN*
Ga0065861_100779230F013525AGGMHDLALKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDDKYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLAR*
Ga0065861_100779232F032656N/AMNFYLVTYAISFVKVNPDNVKEDICHIRFFDTDNFTNSCSFLASLKQVKKLRITGVEFDIEDCDWYDYYEDISNTIH*
Ga0065861_10077926F018712N/AMCQRTKPKMLDRKMRGSHDLQVRLYEAMKQSDLDKEEIQRLNLIIKKLEDNLENAFKSGN

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