Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1007792 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1007792 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14837
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14837

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F010247	Metagenome / Metatranscriptome	306	Y
F013525	Metagenome / Metatranscriptome	270	Y
F018712	Metagenome / Metatranscriptome	233	Y
F031868	Metagenome	181	N
F032656	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100779215	F006893	AGAAGG	MEIQTISESCQKILCNNKLYKDIDFFKVPQNKVLLAVIRSVTQKSFAEIGKHYKKSWFSIYASVKDCQKNGLKSFTNKVIHLVKEDLK*
Ga0065861_100779225	F031868	GGAG	MVTVKQEIERLFLESKKQPHIVETYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQQWKETWNESKI*
Ga0065861_100779228	F010247	AGGAG	MNVQGIVKYVFDNRLGKDGSANKFPNFKFKVGEQEIVLWSAIPHPAIAKGKNISVTVQASKKNGSLFVLTKEDKSPMVQELPNDSKPDTTFNVDDFESENFNTAVTTIEKQMASSTVSTKAFNKDEYMFTMALLKSGIESGKIGVTKEEIDLKIKDYKFLFQMNFNN*
Ga0065861_100779230	F013525	AGG	MHDLALKNPDQIKQELDSISEQMSEALYTFRRCEEFKKITFSQITLTKKLEKNCSVSEAEKWAYSDDKYATIIEGLLVAEKNYSILKGKYANLQSWVDLYRSWLVTQRDLAR*
Ga0065861_100779232	F032656	N/A	MNFYLVTYAISFVKVNPDNVKEDICHIRFFDTDNFTNSCSFLASLKQVKKLRITGVEFDIEDCDWYDYYEDISNTIH*
Ga0065861_10077926	F018712	N/A	MCQRTKPKMLDRKMRGSHDLQVRLYEAMKQSDLDKEEIQRLNLIIKKLEDNLENAFKSGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1007792

Overview

Ecosystem & Geography

Associated Families

Sequences