Scaffold Ga0065861_1005884

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1005884
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31895
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (13.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012345	Metagenome	281	Y
F067422	Metagenome	125	Y
F103264	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100588428	F067422	N/A	MVKQIKRLSLYISTLIILGSCSANYHVLRAIKKGYVCDETSDTIQVSTIDSIPYVLRDSIYWEKVIVQKDTIVRYKRSYVPKTRFQTRIEYKYKTKYIKAEAQKVKYQNKYITKTKVNWLFVILSFIIGFFTRLALSETFRSRLRLLPKL*
Ga0065861_100588433	F012345	N/A	MKYKLTYKIGIATVQEWIFTSKSLAYWKKRDLIETGRFNMGSFEIKEFKF*
Ga0065861_100588438	F103264	N/A	MRKEHKLVALAAVLPVLADWIEDLNDQSVFKRDLKRKANMLMQEIRRVDDQILSIYGKNREQIYEQQVDLQIRFRQFVESIIVD*