Scaffold Ga0065861_1004885

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1004885
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12021
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100488515	F001190	AGG	MSSTPTGQGTADDYFDISKFEELLNRLEGSKGRQQRQKSLESRRDIFAQGLAGMMGNF*
Ga0065861_100488516	F001190	GGAG	MYSTPTGQGTADDYFDVSKFEQLLNRLEGSKGRQQRQKSLESRRDIFAQGLAGMMGNF*
Ga0065861_10048855	F001806	AGAAG	MEAGTRQKRVEGLEAIKNKAMQMATKGHDSLDVRNFVSDAKASLAYELPDEEAFHKAAKATLAYRRSKGK*
Ga0065861_10048858	F002721	GAG	MAQDARLDLGRYIQNPFDKKGQIGKRLDFADLFRSKPETGEYPWNPSRFNQEDLVKRMMTRKITYNPDLNFAPNTPFFDDNKEVTPQYELFEGLGRFNRPDDYDFNEGRAKTMQRPQDQPDYRGEWIEAYKLSPTMNPGKMAKNPMPRMKNPDPNGFLMKMAENRAENEVQNKPSIAQLLDRNGLIKSEPVKTEEKQGQETVTTEETNTSPGKTLS*