Basic Information | |
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Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1004145 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19907 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010357 | Metagenome / Metatranscriptome | 305 | N |
F038420 | Metagenome / Metatranscriptome | 166 | Y |
F080042 | Metagenome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065861_100414530 | F038420 | GAGG | MSILALQDLFQDKVQVASEMSIRELITALGDSVSPVSALSRDSMIDIVAMKLANAELRDGE* |
Ga0065861_100414531 | F080042 | AGGAG | MKNVRLEVMVKKAQTIASLPFEYNPNDTTLRGSATPNHTVGMARAKRLALRGVASVSQPNLYHLRGGV* |
Ga0065861_100414533 | F010357 | AGGAG | MYIDVKYKFRPNPKCRAEVVRYVERMYSLSEVKSKCGQTDVDGGRVLCDACCELADNMERANEL* |
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