Scaffold Ga0065861_1004145

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1004145
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19907
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010357	Metagenome / Metatranscriptome	305	N
F038420	Metagenome / Metatranscriptome	166	Y
F080042	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100414530	F038420	GAGG	MSILALQDLFQDKVQVASEMSIRELITALGDSVSPVSALSRDSMIDIVAMKLANAELRDGE*
Ga0065861_100414531	F080042	AGGAG	MKNVRLEVMVKKAQTIASLPFEYNPNDTTLRGSATPNHTVGMARAKRLALRGVASVSQPNLYHLRGGV*
Ga0065861_100414533	F010357	AGGAG	MYIDVKYKFRPNPKCRAEVVRYVERMYSLSEVKSKCGQTDVDGGRVLCDACCELADNMERANEL*