Scaffold Ga0065861_1003822

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1003822
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23252
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004420	Metagenome / Metatranscriptome	439	Y
F023999	Metagenome	208	N
F043148	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100382211	F004420	N/A	MYKEAFEDEGGKKVLSDLEARCNYRASSYVPGDANATAFEEGKRAVILHIHNMMKEE*
Ga0065861_100382213	F043148	N/A	MDELDRLNVRLDCLRIAVEFGSQRDVMNPNALAENYYEWVMQGSEATRPGDNRKDDGPKSAKKTRSVRDTGSTPQSSNVNV*
Ga0065861_10038227	F023999	GAGG	MTKLTRQRTDIILSSIADGHSIVDVCEATGVSRTAFYQRCKKDEEFAAAVKEAQQYSAEKALEELDTLYGDALHGRKDYNPNVLRDYAHHVRWKVGKVLPEKFGEAKNRAGVEVSDGTVRILWESDSGTTS*