Scaffold Ga0065861_1002567

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1002567
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11024
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F013783	Metagenome / Metatranscriptome	268	Y
F024797	Metagenome / Metatranscriptome	204	Y
F032332	Metagenome	180	Y
F057396	Metagenome / Metatranscriptome	136	Y
F084252	Metagenome / Metatranscriptome	112	Y
F091005	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100256712	F032332	N/A	MESNQGMGFGEDFIKSLLLTLEQTNFEEFMNLSYAVMMQNPSQVLKRKDSVKMKLKAINGMLKYFEEIEEYEKCTNLQKLKQLLFLDTPNDEG*
Ga0065861_100256719	F013783	N/A	LILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVTAMEVYYNTNYRPLDNCNLGDLVSISFFLAASDLYGFSTEFKALDVTTNLKIETGSAYDRQRNAGRKVFIDRQIQLIKNAVADYTKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSTRDTSQFPYNDVKIEEYPPN*
Ga0065861_10025673	F084252	N/A	MPKDFIKCSRCKETFDSGFGYRMHFDKHIDEWYESKDKKKYIKKTTQ*
Ga0065861_10025674	F057396	AGG	MNGKETEYNVEYPKAYIAKIMESENGLISERKTITEIYAGLKLIAEFIGSELRLVEPKPKKTAGMGRYKGHTVPTPDDRMPNIKDKAKAEEDWNEYQAEILHAQKMIKENIWVMDHTGGNVKITYIPMSL*
Ga0065861_10025676	F091005	N/A	MASIELIPGFESFNENDKTIDNLNSMASTDLERIGDYADMIKDRMSQGQTLDAWMYSKISDSVKNLNSVHDTMDGKDGITEAEKHEFNPNETAERLKRREQQNIERFRAAQDREDPFAVQYYQLRISLDKIDLQRLKIQTQIHQLKNKYKK*
Ga0065861_10025678	F024797	GAG	VHIKINTIMSEFFRTAMGRKLIDGDIPNLVKVLERIAIQMEKSNKLEEKKFVLEERIQKLTIKESNKNA*
Ga0065861_10025679	F008425	N/A	MPKKDITYKQFVAHMDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDKRTDGRVEPEPSVWITAKQMEGHMDHMLRQGYKYHIDE*