Scaffold Ga0065861_1002128

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1002128
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2220
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023955	Metagenome	208	Y
F036426	Metagenome / Metatranscriptome	170	Y
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10021281	F036426	AGGA	MKTITILIAMLFSTIAFANDYAPERNDRINLYKVTSDNENAPMYSGYYKDSNGVVHQVAVWAGSSDKYLEGPVTLLESN*
Ga0065861_10021283	F098062	AGGA	MSTQKEMYGQTKDSVIAQFRKVKPLYAGKSNLYIMGILSDAQMMIDAKQYKTANQFINKAKLLLSTKCK*
Ga0065861_10021285	F023955	AGGA	MKVIHNIMLVRDNGDIEYHDVEGEWNEEGSGGPSFEPLYKLLDCRMIEVAYGMEHLSTKEYPIFLNEEGLYKDPIIVNEMATTMQKKWCDANRRMQISPIVGDVAVDLGLNADSLTEVSTEMELQNNERKDNTTEA*