Scaffold Ga0065861_1002073

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1002073
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20985
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F005590	Metagenome / Metatranscriptome	395	N
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F018082	Metagenome / Metatranscriptome	237	N
F020173	Metagenome	225	N
F025969	Metagenome / Metatranscriptome	199	N
F027482	Metagenome	194	N
F064617	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100207318	F027482	AGG	VNKKGLEKWLDRMFAEGKAVTYPCGHFVGREWGRSFDEKLASCSTLAELEGFANRRRFDPSLPRWTATERAEILKRKIKLEKGKRK*
Ga0065861_100207325	F020173	GGA	MICTTCDGTGFIELPRFVDTPDSDAWTTVRCPECQDEDDFDWRNEEEEE*
Ga0065861_100207330	F005843	AGGAG	MTLAEPVFMAFAVFSSVDECEAFAKYYDLARIFEPQCVEMGGEAEYRRPWPDVRPQPRPTQENNNG*
Ga0065861_100207331	F009460	AGGAG	MAKWDISKLENSASVGAYIDEDDSTPTQPTPQMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLERRL*
Ga0065861_100207333	F005590	GGAG	MTENMTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEVLRKEIKRCLSKHGELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF*
Ga0065861_100207339	F000256	N/A	MADGVSGIGSAPFNVQSDIHQQTQSRERIEAHLVEQRVAKEHRANHTHLDALREQKLDLGKAYDRFGTKTTADRPQGTNINIEV*
Ga0065861_100207343	F018082	N/A	VIDMKKVTVVGHKVHTSIGKLVKGDNAELPDAEVETLMRVRPDALIVTGDVEPAPAPAPTKRAKKK*
Ga0065861_10020736	F064617	AGAAG	MADKFLDFIDMIDGGGAGKFGKEFEGGGIFSMLANALATPYGSEDDERKRRVRQMRGLLAPDESIAPKAAPRPTVTRGGGTGRTQVRPQASPAQNMPFGSTPVGGGMPAAPSMTFGNIPVGGGMPAAAQNMARPEMPASGMPQAARAALQGPSPQAGMPTVMTDDDAFRIMVSQLGQTAVDRMSGQQFIQTLNQIKSQGRGM*
Ga0065861_10020738	F025969	AGAAG	MWTALLLLCSVERGCFAFGSPVMQSESQCIQSIPSGLEYARQMFPAYRATDYKCVQWGEGA*