Scaffold Ga0065861_1001748

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1001748
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8457
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F058511	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100174812	F058511	N/A	MTRYALKTMHEGHAFYLAAYYEKLPANNGIYLTLIAEDACSYVTIEKACQVARSLEDSMGCVPSIVEVSY*
Ga0065861_100174814	F032087	GGCGG	MKFLHYEIARASTADLLRAANFLEGAREVRRGCRKQRTKARKDQQTGWRKHVDSSILW*
Ga0065861_100174817	F083373	N/A	MSTHPFDTSSFASVKLKNVPSPLQSEAADYNLRVAAWFDNYAVNAAQFDAAMADQDKLWKMRTAEGWEADEGGWYTPTGISELDWEHDYGNPFPEEPVWENYKALKRCTAGWRLDDTGWYSPEGQHESEWTGPLPEYTLL*
Ga0065861_100174820	F076587	GGAG	MAHAQLISYSYTKGSDALFVQAIVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTREQVLRMLPWITDWCVIPPIEFDD*