Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1000904 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1000904 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30782
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (10.20%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

30782

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (10.20%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003127	Metagenome / Metatranscriptome	506	Y
F004474	Metagenome / Metatranscriptome	436	Y
F030021	Metagenome / Metatranscriptome	186	Y
F053267	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100090436	F030021	N/A	MKTIYAILITFALISCSSERKAQYHVKKALKHGAKFIQDTDTIRITTLDSFPVIRFDSIVWEKFITTKDTVINFRNVYVPKTRFQTRIEYKERVKIERIKGKTITKNHEVVKYRINWWLLLLSFFLGIFSPKLIKLVLTKQF*
Ga0065861_100090441	F004474	N/A	MNYLLSVENLKKLGLIHQNTDTKILAVAIRRSQDIHVQPALGTPLYKALLLRVQNNTWTPTYLTLMNDYVVPCLVAYVDYRCALLLNEKLTNKSVGRVNDENIQANNTPDTYVLRDQLLKDAQFYKERLIGFLMDDNGDNYPEYIDCCGSPSMCHEKVTKDNTGYSPLNWIV*
Ga0065861_100090444	F003127	N/A	MSCLMTTGYNDRTCTNGKGGIKSVLLFPLGATSNAVVSGANELTSLTVTGETFLYKLKSNLSSFTAPVRVDKNNGTLWYEHELSMILASDSKELRAEIHLLAQNECVCLVENADGTIVALGLGEGLQVADANEYTSGVMKSDRKGHVIVMRGMENDEVPDVNATLYTTLLAQQSPVI*
Ga0065861_10009047	F053267	GGA	MANKHRNIDKDELLEMAYRYCDFCISSTKEIATNSGVKQVKERHIPTVSYFLLHWLRREHFDFYSRTNWYDAMKDESHPLSYTIKTIDNDFNALARDIVANEGKGIFYAKNKLGMHDRQQVETRTVDKFDFDVND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1000904

Overview

Ecosystem & Geography

Associated Families

Sequences