Scaffold Ga0065861_1000700

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1000700
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8146
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (51.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10007002	F003365	AGG	MKTIGKEWTKKEEGGTFTADHLSPSQLNKSLDMWFNDYVVLTAEQRKSLFGNLNMDIGAIVGQAVQDLIVHKLTFEEVMKGKK*
Ga0065861_10007005	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFVKVFAQVGVLFKGDDKFTGDMNYPEAGGAKGLIGWINESGNILSGYKNEPRPKQPKAESKEIPF*
Ga0065861_10007007	F005537	AGG	MSDNIKFINNLEKLLHEKEGDYGHFDHTAFVMGGMMEKYLSVHNNKPVKVPLKFFGLFMIFLKCWRIMQSKDYKKDSFDDINGYTELLRRLVINENKTKRT*
Ga0065861_10007009	F008307	AGCAG	MVKVLKQSSLEISADVEEFFDGETIEEATKKAHYQIMPGELAKINITDNKFIKATIKVVGEEHDNESKQYSKIVPEAE*