Scaffold Ga0065861_1000343

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1000343
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29599
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.60%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100034313	F038672	N/A	MDELDVMLRRNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRENHRVIAKLKYENAVAYKENAILKADFSKYKHNLINVELNSDKNG*
Ga0065861_100034321	F081203	GGA	MDKYEFYYRQKQEWDYWQSNQRHNFLSDRLLGIISQVQWNKVILKKTKLSDNDLEIHQNRFSNLITEVMKISIELKELAINYNPKRIQKIILILTKIKNYNNE*
Ga0065861_100034322	F016832	N/A	MSRTINYTTRTFYVPAEKLETLIKFQNKCKENGHRSYSEVILKLMENYNNG*
Ga0065861_100034341	F020903	N/A	MAEQLDIFGFDVDQLEEVKIDNPTTLSQVFNNIAADMVYCLKQSVKKEGLVYKGSLEDSIRMPVKMFGFRMIATLYLADYYDYLNQGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKRGPSVSHIEAWAKSKGLNEYAVRNSIARTGIKPRYFFDNCMKETFYGEAFNKFKTDIRIVSGERIAKGLKEILKK*
Ga0065861_100034343	F029278	N/A	MDITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKKKRFKIGGQWYEFKVDARKLLFGEYINTMEILQNAKDDQEAIFNNLHHILTTICRPVKKTVFGWKHIKVDSELLRETSDNFLNNMPITIAYPIGVFFYSHSEYLTKIIETSLTDLAKKMTKEAKVELDLLKSGGGGIH*
Ga0065861_10003435	F043411	GAG	MDLMKVAKIEKEMLKRRLTYNDKRVYIKSLGSNIAIVSHHKENDYKQFKVNIKDLVEFK*
Ga0065861_10003438	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFILQLDKENSVKKYVYKLCLYQIISERGQYRTKYYIPSQFGSIEDIETYSNTCFKDQVLKDLINSLDGLDRIMMEQLLHCGGNKNCLADKSDIHRNTIQYKFKELANKIKQKWSLNEFYS*
Ga0065861_10003439	F030436	N/A	MKSTLNKIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHQNYEKVINDRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY*