Scaffold Ga0065861_1000109

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1000109
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15351
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F046384	Metagenome	151	Y
F055737	Metagenome	138	Y
F056147	Metagenome	138	N
F088901	Metagenome	109	N
F101156	Metagenome	102	N
F103281	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100010916	F026881	N/A	MKNKKYTTKERFKILESTVATLYVAIEKHSKKIDVIDKFLTKATKDYKED*
Ga0065861_100010917	F101156	N/A	MNKEITVEYDNIALVVVGEYQKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELENQAIEIIEEQW*
Ga0065861_10001092	F056147	N/A	MNIAVKIRRHENQTEYYDLKLSTYKESIEGKFSKEDLRYLIQQIDNEII*
Ga0065861_100010922	F103281	GAG	MYETQGLKNDIIYQFYYITLYDYEKGTDLEDLRIILYDYEDKEMYLECEGIKLAIEQIEFTQLIKNIIDDNERD*
Ga0065861_100010927	F088901	N/A	MVEVKQGEVIVTKNNTTKIYTLKEYTDTIYYRKLYTRIYQIICLLATMFIPAIFINLFK*
Ga0065861_100010928	F055737	N/A	MTRNVRDAISWCLKNDIKVIVKPLTRTRRPEVKLEIHREGRIQIGNETYIQDKKLGDKIQELYLYLYKTLR*
Ga0065861_10001096	F046384	N/A	MKNEPIHETVKDLYTFKNMQIDALQKELCIANKRITNLETFIFELCDEDCPESYKDIVKKEVLNDFTRD*