Scaffold Ga0065861_1000041

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1000041
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36392
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (19.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013478	Metagenome / Metatranscriptome	271	Y
F073501	Metagenome	120	Y
F076625	Metagenome	118	N
F096244	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100004111	F013478	N/A	MQDLKIAFTNIFALGLSVSEANPILQTVSLILAIGYTLISIYKKLKK*
Ga0065861_100004121	F076625	AGGGGG	MLPLFYYPIMIERQVRILSDYISKQNNATWREKQAFNDLINHCEMLDNNYKDKTLYLERLASWYIDHIFELNQDHIKEISWEFFKHILLDKLSIVLNTPSQYNYNSLENNILGLDIQNGNKLKPYGSVSRASELLIKDIIVNNTKDKYEPIKDRL*
Ga0065861_100004124	F096244	N/A	MNIQFEMIRGFLLGIDYLEDIKQEDVHGVITFDLLRISLGIVFIHIMVNARDSQ*
Ga0065861_100004134	F073501	N/A	MAKKVAVDYSVVNQEAAKWCMDRGYKIYPTPIEFKNLNERTKKGIKFKLVVEFGGAKKVGTKLYEDVEWSNAIWSVYSYLYNKHGRNG*