Scaffold Ga0068980_1031918

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068980_1031918

Scaffold Ga0068980_1031918

Overview

Basic Information
Taxon OID	3300004401 Open in IMG/M
Scaffold ID	Ga0068980_1031918 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	668
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010968	Metagenome / Metatranscriptome	296	Y
F075789	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068980_10319181	F075789	N/A	AKTIILLAVLCLGLSAMPQTTSSTQSDSADQHHSKKAKDEITARGCLGKQNTDYILTQPDVGNSYELERSRKLRLGPYLGQEVEVTGTETPSMSTSSDFLARTGSASPVTIRVTAIKTISKRCSAN*
Ga0068980_10319182	F010968	N/A	VRILDLSDPRNPKTLQEFNGVTSLLPDGGHGLIYLTNNEGLWILRYNRPALLEPAKKKRPCDSNSDLMAMPPDCD*

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