Scaffold Ga0065726_18677

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_18677
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10209
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028043	Metagenome / Metatranscriptome	193	N
F040934	Metagenome / Metatranscriptome	161	Y
F069324	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_186771	F040934	AGGA	MITTIATVDILNLAIDQLDEGRTVDSKDTLITYRDKLQNEIDEFDKWSQTQSDIHTSLELEAEGK*
Ga0065726_1867714	F028043	N/A	MKKVLIQCLYIFVLVIIFYFYLTWANACEQEVKPDLLVCEELQVSTEEKPCKKREGNINTVIKALEKLAESGTLPK*
Ga0065726_1867722	F069324	GAG	MISDEDFKFLLKESRYAQKVLEIGTGTGKSTTALSANRAEVYTIDQNNIFEYVGIENFINRFSCTSIDYWKRYNHLNFDFVFVDGSIGVTDCKEILKRTTENFKIIFHDYLPNEAKDPGRNKGWYNMKVFKETSLLTYDITISTGGTHCVLAELKKDR*