Scaffold Ga0065726_18068

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_18068
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10809
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (34.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000744	Metagenome / Metatranscriptome	909	Y
F005478	Metagenome / Metatranscriptome	399	Y
F007569	Metagenome / Metatranscriptome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1806811	F005478	GAGG	MYDDYDLDYTFSNDYNLDEDACEYYMLTDAHDLDEDYAHNTQDYDALAYRHYA*
Ga0065726_1806821	F000744	AGG	MTEDFVRLNVHEIGIILSALQQLENVDENRIAKEYGSVPTLYNKLYTIWEGMDRSETGLRNDVIPSY*
Ga0065726_1806828	F007569	AGGAG	MTERNFTQEQYKMIFTAVRRWQIEKTLTDSEEYCKCSDILDELFPYAYTQRQEQPT*