Scaffold Ga0065726_17895

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_17895
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10975
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1789512	F025614	AGAAG	MKEKIDITKINIFTNPKFMKVWAKQFDQACGSDTFNVAPNMIKLRFLMDKFVTDYNWHLNQLEEE*
Ga0065726_1789516	F014085	N/A	MSMDNLSQMRQEALKRAGGRCEWAYCNDNKWLELAHIQGIGMGGSKSRKFDMNNVAILCKWHHDIYDGRQSSGHSKAIRDLLQGFLKREYKGK*
Ga0065726_178952	F010091	N/A	MYIMKTMNIDELLSEAETGKRSAIVDRITEEAKPFWQGCEERVIAGRQLKPYVVSRLLKENFGIKISESAVRNHFQNLADSNE*
Ga0065726_1789522	F023355	N/A	MPLPEAYVNASPKAMEYCDNCEYYSNNYCVKFKEQVAPYGWCAVWEPVDEIRSIKS*
Ga0065726_178954	F040134	N/A	MDNINVKSKWKLSGLEYSGLGDKPYFILINDQGDVKLLPVERGVTNLRNLLNLEEE*