Scaffold Ga0065726_17878

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_17878
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10987
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F060451	Metagenome	133	Y
F097164	Metagenome	104	Y
F098268	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1787811	F008401	N/A	MESQKLLTIAQTAELLNCSAGFVRKRISLTESKQPGGWPKSTYVNLQPNGAKSLFRINKDALQEYLKGQEEQAKVSEETSTCSTGTCTF*
Ga0065726_1787814	F098268	AGGCGG	VSKRRKGSDFFGWDNHSPKKSDFSFDGIPGASKASSLNRPMPWKNKFRPDQNLKDFSVLFDYNYASMWTRWRRGYELYTYTNQALLGLNYTFRYAINGQAGSGGVELPGLCYMYPSSDQDMGMRMVVIRPRDSFNFLDFGYSIKSVFDYDTTNNIIGVELSSNFGAPISFFTGEVLSDRFAADGTEKTTYSNYTVVAVGTKAGGPAVPSPAPFQDTLFLSVTADTSWTSIEDQSFTAPAVSNPTVGEYLTTAMRFGCNCPDYLAREDFNLYKYGTNRNYPYTLPQDLKPGTYDAGTNTFEGERPVQLRDFPGFVRDFGFLYTKQLLNLPAYRDDAAASYSDPNLLYFQPRFCKHIYATWWDMQNRFTNYSYLDAYLAQPTDEPLDDRYREHFERNLIKQTDFLHKVKELNWWEKYSPSKEGVPDHILYSDMNPVVVKVLNFDTLASGGVSPLVPSGFSMFDIDTFNPLQPVPPENTPIADGGTYLNGIVVSGFSPIIIYDGGAYLSGSGLPPLYRPSINGGTY*
Ga0065726_1787815	F001215	GAG	VASTSTNKSPMMVDRPFLRGAKITNATATISAVNPEFANLIQLVRVGDIPSEDAAIVEDVFIVSNEGYPDDGGVRAITLGLYVYAPNQAAPSTAASLLINKFVVGLSGSTEGLIQRVELPKTIAPTPQTGFTNQIRPIELGAAEAMYLEKGYILGVGYLGTADVAVSGGLSPSGVSVWAQGGFY*
Ga0065726_178785	F097164	N/A	MVLATVDFVSPLDLIATTTSFFGGEIFLDPASSDNANNVVQATRYFSWENNGLIQDWKGKNIYLYPPRDISLKSEQPKSDKLFEKTKYFKKSNQRVWLELAYKKWIKKEFDEGIIFITSTEVALLVTQKVGINLPVCVLKEHPKLLQDTKELKPLKQSKVFGFVFYLPSINDYQQRTHDFHRLYSDLGRVYL*
Ga0065726_178789	F060451	N/A	MNGSEHISLGLTLEDEFTLTRIKNDAYGLKGKERDQYLWDRIVRFVCRERAFKFVIDELGVVVDPNIKVFDDFKADE*