NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_17525

Scaffold Ga0065726_17525


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_17525 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11380
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (64.52%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068900Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1752525F068900GAGMKEYEVYSEYMKGTRVGQVVRHLQNKYWGVYLTDKATGKGGFLMWHPTKSEYWCEDIAENFCLKMLNQDGTPA*

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