Scaffold Ga0065726_17210

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_17210
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11737
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001900	Metagenome / Metatranscriptome	620	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_172102	F005479	GAG	MPELIATLKALKKREHGERKFFASLKGVDIGEFEEEGKQGSSFEEIQLRAAGIDANPNDVISLQGRFAAEAGFGIGAGLGYSKE*
Ga0065726_172105	F000258	GGAGG	MTANYKLDAMLELRKYLWKELYTRNIFDEQDYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVADINEIRNYMTDEFRRMDESAKDINKWVDLSNKFKFHSVYLADISPTAPSEELQGFFSAEVILEIKYSRITDSVGRFL*
Ga0065726_172106	F001900	GGAG	LDNSGLLVQAASGLERMMYANQNGPLKDSTVAQISAFVYYKAAVISKISTNAQFRAAFTKTMFDQINTDFGNYVDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEEGLSFRINYEFLPSKSMVPSSTGKRRHMFINKASVMEAGKPLVIQPRNAERLVFEIDGETIFMPKGKAVIVRRPGGSGARNQFALAYSRFFSGSLVNASIKSSGFQRLFNSGMSKALRLPSDIKKVKYTFSPNTIRSQADSALSLAFGGAL*
Ga0065726_172107	F001229	GAG	MNSIVDSVLSMNLDVYRQSELQDTDTGALVKEWNYHRTVACHAKGVISNSSARGSGDQQVFSNKYLNDQVIQVRTAKKLTIREKVTNIRDTDGNVIWNEINYPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ*
Ga0065726_172109	F001106	AGGAG	MSFETLKVSELKKIASDFAVETEGLKNKADIIAALSEEGVSWSVYNTTLAKMEEEDMTTEVLPKFDPKADLPENTVLVKMDRHNYRYDTMEFTFTKEHPFIAMNKDKAQEIFDKEEGFRLATPKEVQEFYN*